U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1584810: Whole genome shotgun sequencing of Listeria monocytogenes serovar 3b by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 466,588 spots, 151.4M bases, 86.9Mb downloads

External Id: EXT00163538
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr project: University of Turin, Department of Veterinary Sciences, Italy
PRJNA304956 • SRP070119 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Listeria monocytogenes as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
Sample:
SAMN04418003 • SRS1296322 • All experiments • All runs
Organism: Listeria monocytogenes
Library:
Name: Listeria monocytogenes serovar 3b Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Listeria monocytogenes serovar 3b.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 466,588 spots, 151.4M bases, 86.9Mb
Run# of Spots# of BasesSizePublished
SRR3169074466,588151.4M86.9Mb2016-02-15

ID:
2239133

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...